{"status":"OK","data":{"id":6456,"identifier":"GOGWGH","persistentUrl":"https://doi.org/10.34894/GOGWGH","protocol":"doi","authority":"10.34894","separator":"/","publisher":"DataverseNL","publicationDate":"2018-09-04","storageIdentifier":"surf://10411/PIPXST","effectiveDatasetFileCountLimit":10000,"datasetFileUploadsAvailable":9997,"datasetType":"dataset","locks":[],"latestVersion":{"id":818,"datasetId":6456,"datasetPersistentId":"doi:10.34894/GOGWGH","datasetType":"dataset","storageIdentifier":"surf://10411/PIPXST","versionNumber":1,"internalVersionNumber":15,"versionMinorNumber":0,"versionState":"RELEASED","latestVersionPublishingState":"RELEASED","deaccessionLink":"","lastUpdateTime":"2018-09-04T14:47:35Z","releaseTime":"2018-09-04T14:47:35Z","createTime":"2017-06-01T12:32:09Z","alternativePersistentId":"hdl:10411/PIPXST","publicationDate":"2018-09-04","citationDate":"2018-09-04","effectiveDatasetFileCountLimit":10000,"datasetFileUploadsAvailable":9997,"license":{"name":"CC0-1.0","uri":"http://creativecommons.org/publicdomain/zero/1.0","iconUri":"https://licensebuttons.net/p/zero/1.0/88x31.png","rightsIdentifier":"CC0-1.0","rightsIdentifierScheme":"SPDX","schemeUri":"https://spdx.org/licenses/","languageCode":"en"},"termsOfAccess":"Pre-publishing version","fileAccessRequest":true,"metadataBlocks":{"citation":{"displayName":"Citation Metadata","name":"citation","fields":[{"typeName":"title","multiple":false,"typeClass":"primitive","value":"Replication Data for: Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics"},{"typeName":"author","multiple":true,"typeClass":"compound","value":[{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Chaib De Mares, Maryam"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Javier Jiménez, Diego"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Lebrun, Laura A. "},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Laboratory of Microbiology, Wageningen University"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Muller, Emilie E.L."},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Laboratory of Microbiology, Wageningen University"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Wilmes, Paul"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Laboratory of Microbiology, Wageningen University"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Sipkema, Detmer"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Luxembourg Centre for Systems Biomedicine, University of Luxembourg"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"van Elsas, Jan Dirk"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen"}}]},{"typeName":"datasetContact","multiple":true,"typeClass":"compound","value":[{"datasetContactName":{"typeName":"datasetContactName","multiple":false,"typeClass":"primitive","value":"Chaib De Mares, Maryam"},"datasetContactAffiliation":{"typeName":"datasetContactAffiliation","multiple":false,"typeClass":"primitive","value":"Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen"}}]},{"typeName":"dsDescription","multiple":true,"typeClass":"compound","value":[{"dsDescriptionValue":{"typeName":"dsDescriptionValue","multiple":false,"typeClass":"primitive","value":"<p>Data files generated within the project described in the paper: “Expressed protein profile of a “<i>Candidatus</i> Entotheonella”-like bacterium and other microbial symbionts in the marine sponge <i>Aplysina aerophoba</I> as evidenced by metaproteomics”.<br/>\r\nData is organized in two zip archives <b.1_Raw_data.zip</b> and <b>2_Processed_data.zip</b>.</p>\r\n<p><b>Contents of the archives</b></p>\r\n<p><b>1_Raw_data.zip</b>:<br/>The directory <b>peaks_exports</b> contains the information related to the <i>de novo</i> sequencing of the peptides. There is one subdirectory for each sample (10 in total). Each sample subdirectory contains 5 files:</p>\r\n<ul>\r\n<li><b>DB search psm.csv</b>: Output of the database search including post-translational modifications (PTM)</li>\r\n<li><b>de novo only peptides.csv</b>: Features of de novo peptides only</li>\r\n<li><b>peptide.csv</b>: Features of peptides identified</li>\r\n<li><b>protein-peptides.csv</b>: Features of peptides matching proteins in the database</li>\r\n<li><b>proteins.csv</b>: Features of all identified proteins</li>\r\n</ul>\r\n<p><b>2_Processed_data.zip</b>:<br/>The archive contains two subfolders:<br/>\r\n<b>1_Assemblies_databases</b>: Metagenomic assemblies (contigs > 1 Kbp) used as a database for matching sequenced peptides. There are two, one for the sponge <b>aply_sponge_1k_aa.faa</b>, and one for the seawater <b>sw_1k_aa.faa</b><br/>\r\n<b>2_Protein_fastas</b>: Includes the actual input for the analyses presented, and similarly is divided into two subfolders: <b>Seawater_Mediterranean</b>, containing four files, one for each seawater sample analyzed; and <b>Sponge_Aplysina_aerophoba</b> which includes six files, one for each sponge sample analyzed.<br/>All files are named according to sample identifiers provided in the manuscript, namely:</p>\r\n<ul>\r\n<li><b>DB search psm.csv</b>: Output of the database search including post-translational modifications (PTM)</li>\r\n<li><b>proteins_16B.fasta</b> (Sponge Aplysina aerophoba)</li>\r\n<li><b>proteins_16C.fasta</b> (Sponge Aplysina aerophoba)</li>\r\n<li><b>proteins_17.fasta</b> (Sponge Aplysina aerophoba)</li>\r\n<li><b>proteins_19A.fasta</b> (Sponge Aplysina aerophoba)</li>\r\n<li><b>proteins_19B.fasta</b> (Sponge Aplysina aerophoba)</li>\r\n<li><b>proteins_25.fasta</b> (Sponge Aplysina aerophoba)</li>\r\n<li><b>proteins_sw5.fasta</b> (Mediterranean seawater)</li>\r\n<li><b>proteins_sw6.fasta</b> (Mediterranean seawater)</li>\r\n<li><b>proteins_sw7.fasta</b> (Mediterranean seawater)</li>\r\n<li><b>proteins_sw8.fasta</b> (Mediterranean seawater)</li>\r\n</ul>\r\n\r\n"},"dsDescriptionDate":{"typeName":"dsDescriptionDate","multiple":false,"typeClass":"primitive","value":"2017-06-01"}}]},{"typeName":"subject","multiple":true,"typeClass":"controlledVocabulary","value":["Earth and Environmental Sciences"]},{"typeName":"keyword","multiple":true,"typeClass":"compound","value":[{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"Metabolic profile "}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"Metaproteomic approach"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"Microbial symbionts"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"Marine sponge "}}]},{"typeName":"publication","multiple":true,"typeClass":"compound","value":[{"publicationCitation":{"typeName":"publicationCitation","multiple":false,"typeClass":"primitive","value":"Chaib De Mares M, Jiménez DJ, Palladino G, Gutleben J, Lebrun LA, Muller EEL, Wilmes P, Sipkema D, van Elsas JD (2018). Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics. Scientific Reports 8: 11795."},"publicationIDType":{"typeName":"publicationIDType","multiple":false,"typeClass":"controlledVocabulary","value":"doi"},"publicationIDNumber":{"typeName":"publicationIDNumber","multiple":false,"typeClass":"primitive","value":"10.1038/s41598-018-30134-0"},"publicationURL":{"typeName":"publicationURL","multiple":false,"typeClass":"primitive","value":"https://doi.org/10.1038/s41598-018-30134-0"}}]},{"typeName":"contributor","multiple":true,"typeClass":"compound","value":[{"contributorType":{"typeName":"contributorType","multiple":false,"typeClass":"controlledVocabulary","value":"Data Curator"},"contributorName":{"typeName":"contributorName","multiple":false,"typeClass":"primitive","value":"groningen Institute for Evolutionary Life Sciences"}}]},{"typeName":"depositor","multiple":false,"typeClass":"primitive","value":"Bakker, Joke"},{"typeName":"dateOfDeposit","multiple":false,"typeClass":"primitive","value":"2017-06-01"}]},"dansDataVaultMetadata":{"displayName":"Data Vault Metadata","name":"dansDataVaultMetadata","fields":[{"typeName":"dansDataversePid","multiple":false,"typeClass":"primitive","value":"doi:10.34894/GOGWGH"},{"typeName":"dansDataversePidVersion","multiple":false,"typeClass":"primitive","value":"1.0"},{"typeName":"dansBagId","multiple":false,"typeClass":"primitive","value":"urn:uuid:73380b34-d29d-412f-8f7c-84b49b1aacaf"},{"typeName":"dansNbn","multiple":false,"typeClass":"primitive","value":"urn:nbn:nl:ui:13-b55ad8c8-c36a-4b32-82e5-c4d12552f014"}]}},"files":[{"description":"Note: The .tar format is added to preserve the folder structure within the .zip archive","label":"1_Raw_data.zip.tar","restricted":false,"version":1,"datasetVersionId":818,"dataFile":{"id":6519,"persistentId":"","filename":"1_Raw_data.zip.tar","contentType":"application/x-tar","friendlyType":"TAR Archive","filesize":6362624,"description":"Note: The .tar format is added to preserve the folder structure within the .zip archive","storageIdentifier":"surf://store:15c63b98aaf-b470fbad7d42","rootDataFileId":-1,"checksum":{"type":"SHA-1","value":"19e066b0aacbeb7da04b49b824d257648f799b84"},"tabularData":false,"creationDate":"2017-06-01","publicationDate":"2018-09-04","lastUpdateTime":"2018-09-04T14:47:35Z","fileAccessRequest":true}},{"description":"Note: The .tar format is added to preserve the folder structure within the .zip archive","label":"2_Processed_data.zip.tar","restricted":false,"version":1,"datasetVersionId":818,"dataFile":{"id":6520,"persistentId":"","filename":"2_Processed_data.zip.tar","contentType":"application/x-tar","friendlyType":"TAR Archive","filesize":176318464,"description":"Note: The .tar format is added to preserve the folder structure within the .zip archive","storageIdentifier":"surf://store:15c63b9cd8a-b78a9b2c8093","rootDataFileId":-1,"checksum":{"type":"SHA-1","value":"bca5776bf6e28396d65b9050656dc3991318c6ad"},"tabularData":false,"creationDate":"2017-06-01","publicationDate":"2018-09-04","lastUpdateTime":"2018-09-04T14:47:35Z","fileAccessRequest":true}},{"description":"Metadata for the archives 1_Raw_data.zip and 2_Processed_data.zip","label":"README.txt","restricted":false,"version":1,"datasetVersionId":818,"dataFile":{"id":6521,"persistentId":"","filename":"README.txt","contentType":"text/plain","friendlyType":"Plain Text","filesize":2342,"description":"Metadata for the archives 1_Raw_data.zip and 2_Processed_data.zip","storageIdentifier":"surf://store:15c63bd1abb-6b2aa5b2c22f","rootDataFileId":-1,"checksum":{"type":"SHA-1","value":"9eb812ed77568d1606b2ac9a50d3debe97ec88ec"},"tabularData":false,"creationDate":"2017-06-01","publicationDate":"2018-09-04","lastUpdateTime":"2018-09-04T14:47:35Z","fileAccessRequest":true}}]}}}