{"status":"OK","data":{"id":10892,"identifier":"ENMQYA","persistentUrl":"https://doi.org/10.34894/ENMQYA","protocol":"doi","authority":"10.34894","separator":"/","publisher":"DataverseNL","publicationDate":"2018-11-21","storageIdentifier":"surf://10411/C0XRZC","effectiveDatasetFileCountLimit":10000,"datasetFileUploadsAvailable":9991,"datasetType":"dataset","locks":[],"latestVersion":{"id":1628,"datasetId":10892,"datasetPersistentId":"doi:10.34894/ENMQYA","datasetType":"dataset","storageIdentifier":"surf://10411/C0XRZC","versionNumber":1,"internalVersionNumber":4,"versionMinorNumber":2,"versionState":"RELEASED","latestVersionPublishingState":"RELEASED","deaccessionLink":"","lastUpdateTime":"2019-06-06T15:49:03Z","releaseTime":"2019-06-06T15:49:03Z","createTime":"2019-06-06T15:48:52Z","alternativePersistentId":"hdl:10411/C0XRZC","publicationDate":"2018-11-21","citationDate":"2018-11-21","effectiveDatasetFileCountLimit":10000,"datasetFileUploadsAvailable":9991,"license":{"name":"CC0-1.0","uri":"http://creativecommons.org/publicdomain/zero/1.0","iconUri":"https://licensebuttons.net/p/zero/1.0/88x31.png","rightsIdentifier":"CC0-1.0","rightsIdentifierScheme":"SPDX","schemeUri":"https://spdx.org/licenses/","languageCode":"en"},"fileAccessRequest":false,"metadataBlocks":{"citation":{"displayName":"Citation Metadata","name":"citation","fields":[{"typeName":"title","multiple":false,"typeClass":"primitive","value":"Replication Data for: An automated method to determine the performance of Drosophila in response to temperature changes in space and time"},{"typeName":"author","multiple":true,"typeClass":"compound","value":[{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Soto-Padilla, Andrea"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Groningen Institute for Evolutionary Life Sciences"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Ruijsink, Rick"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Ruijsink Dynamic Engineering"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Span, Mark"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Department of Psychology"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"van Rijn, Hedderik"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Department of Psychology"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Billeter, Jean-Christophe"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Groningen Institute for Evolutionary Life Sciences"}}]},{"typeName":"datasetContact","multiple":true,"typeClass":"compound","value":[{"datasetContactName":{"typeName":"datasetContactName","multiple":false,"typeClass":"primitive","value":"Billeter, Jean-Christophe"},"datasetContactAffiliation":{"typeName":"datasetContactAffiliation","multiple":false,"typeClass":"primitive","value":"Groningen Institute for Evolutionary Life Sciences"}}]},{"typeName":"dsDescription","multiple":true,"typeClass":"compound","value":[{"dsDescriptionValue":{"typeName":"dsDescriptionValue","multiple":false,"typeClass":"primitive","value":"The locomotor performance of Drosophila is automatically determined in a temperature-controlled arena that produces fast and accurate temperature changes in time and space. The temperature-controlled arena is related to the following scripts:\r\n
    \r\n
  1. TemperaturePhases.m
    2. \r\n
  2. TemperaturePhases_ShiftingComfortableTIle.m
    3. \r\n
  3. FlySteps_Analysis.r
    4. \r\n
  4. FlySteps_Analysis.m
    5. \r\n
  5. Fly_Tracker
    6. \r\n
  6. Examples
    7. \r\n
\r\nFor further questions on set-up and usage contact the authors."},"dsDescriptionDate":{"typeName":"dsDescriptionDate","multiple":false,"typeClass":"primitive","value":"2018-04-17"}}]},{"typeName":"subject","multiple":true,"typeClass":"controlledVocabulary","value":["Earth and Environmental Sciences","Medicine, Health and Life Sciences"]},{"typeName":"keyword","multiple":true,"typeClass":"compound","value":[{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"Temperature-controlled arena"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"Drosophila"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"fly arena"}}]},{"typeName":"publication","multiple":true,"typeClass":"compound","value":[{"publicationCitation":{"typeName":"publicationCitation","multiple":false,"typeClass":"primitive","value":"Soto-Padilla A, Ruijsink R, Span M, van Rijn H, Billeter J-C (2018). An automated method to determine the performance of Drosophila in response to temperature changes in space and time. J. Vis. Exp. 140: e58350."},"publicationIDType":{"typeName":"publicationIDType","multiple":false,"typeClass":"controlledVocabulary","value":"doi"},"publicationIDNumber":{"typeName":"publicationIDNumber","multiple":false,"typeClass":"primitive","value":"10.3791/58350"},"publicationURL":{"typeName":"publicationURL","multiple":false,"typeClass":"primitive","value":"https://www.jove.com/video/58350/an-automated-method-to-determine-performance-drosophila-response-to"}}]},{"typeName":"notesText","multiple":false,"typeClass":"primitive","value":"Submitted to JoVE (Journal of Visualized Experiments)\r\nPublished 12-10-2018"},{"typeName":"depositor","multiple":false,"typeClass":"primitive","value":"Bakker, Joke"},{"typeName":"dateOfDeposit","multiple":false,"typeClass":"primitive","value":"2018-04-17"}]},"dansDataVaultMetadata":{"displayName":"Data Vault Metadata","name":"dansDataVaultMetadata","fields":[{"typeName":"dansDataversePid","multiple":false,"typeClass":"primitive","value":"doi:10.34894/ENMQYA"},{"typeName":"dansDataversePidVersion","multiple":false,"typeClass":"primitive","value":"1.2"},{"typeName":"dansBagId","multiple":false,"typeClass":"primitive","value":"urn:uuid:d188c084-f9ff-4853-94ed-8834f5416d00"},{"typeName":"dansNbn","multiple":false,"typeClass":"primitive","value":"urn:nbn:nl:ui:13-13449ff6-e59e-4d86-9690-1e6569617bcb"}]}},"files":[{"description":"Main code for the programmable circuit inside the temperature-controlled arena.","label":"ArduinoControl.ino","restricted":false,"version":1,"datasetVersionId":1628,"dataFile":{"id":10893,"persistentId":"","filename":"ArduinoControl.ino","contentType":"application/octet-stream","friendlyType":"Unknown","filesize":15098,"description":"Main code for the programmable circuit inside the temperature-controlled arena.","storageIdentifier":"surf://store:162d442520d-38ceecd8cd78","rootDataFileId":-1,"checksum":{"type":"SHA-1","value":"50c53ca94cd0dc1b185a90504d38d76a4d9fa4e6"},"tabularData":false,"creationDate":"2018-04-17","publicationDate":"2018-11-21","lastUpdateTime":"2019-06-06T15:49:03Z","fileAccessRequest":false}},{"description":"This folder contains example files of the FlySteps output used to produce Figure 2. Each file name represents a Drosophila species (melanogaster (CS), simulans (Sim), subobscrua (Sub), suzukii (Suz), yakuba (Yac)), the sex of the fly (m=male), and the number of experiments (1-15). The first column of the file contains the frame, the second and third columns the on (1) or off (0) state of the left and right indicative red LEDs respectively, and the fourth and fifth columns contain the x and y location of the fly respectively.","label":"Examples.zip","restricted":false,"version":1,"datasetVersionId":1628,"dataFile":{"id":10894,"persistentId":"","filename":"Examples.zip","contentType":"application/zip","friendlyType":"ZIP Archive","filesize":7525277,"description":"This folder contains example files of the FlySteps output used to produce Figure 2. Each file name represents a Drosophila species (melanogaster (CS), simulans (Sim), subobscrua (Sub), suzukii (Suz), yakuba (Yac)), the sex of the fly (m=male), and the number of experiments (1-15). The first column of the file contains the frame, the second and third columns the on (1) or off (0) state of the left and right indicative red LEDs respectively, and the fourth and fifth columns contain the x and y location of the fly respectively.","storageIdentifier":"surf://store:162d44252a7-5f9b6851f736","rootDataFileId":-1,"checksum":{"type":"SHA-1","value":"1b67355b6e7d0353414929e4f127e31204e4f920"},"tabularData":false,"creationDate":"2018-04-17","publicationDate":"2018-11-21","lastUpdateTime":"2019-06-06T15:49:03Z","fileAccessRequest":false}},{"description":"Script to analyse the speed of individual flies that have been tracked by the FlySteps tracker. Multiple files can be analysed together. The output results will be stored in a folder called results inside the folder that contains the tracker output files. Result will be presented in a .csv file. Each individual fly’s information, including name, will be presented in one column of the .csv file. Results are produced in cm/s.","label":"FlySteps_Analysis.r","restricted":false,"version":1,"datasetVersionId":1628,"dataFile":{"id":11517,"persistentId":"","filename":"FlySteps_Analysis.r","contentType":"type/x-r-syntax","friendlyType":"R Syntax","filesize":4933,"description":"Script to analyse the speed of individual flies that have been tracked by the FlySteps tracker. Multiple files can be analysed together. The output results will be stored in a folder called results inside the folder that contains the tracker output files. Result will be presented in a .csv file. Each individual fly’s information, including name, will be presented in one column of the .csv file. Results are produced in cm/s.","storageIdentifier":"surf://store:16421d1e585-ef299b039dbd","rootDataFileId":-1,"checksum":{"type":"SHA-1","value":"f84010b03773ee2e769fd99f2d7fe216de213eb5"},"tabularData":false,"creationDate":"2018-06-21","publicationDate":"2018-11-21","lastUpdateTime":"2019-06-06T15:49:03Z","fileAccessRequest":false}},{"description":"Script to analyse the speed of individual flies exposed to a ShiftingComfotableTile protocol. The script permits specifying which tile was comfortable on each iteration. Results are produced in cm/s. This script also allows correcting for errors in perspective of a rectangular area due to the camera used for recording","label":"FlySteps_Anlysis.m","restricted":false,"version":1,"datasetVersionId":1628,"dataFile":{"id":11519,"persistentId":"","filename":"FlySteps_Anlysis.m","contentType":"application/vnd.wolfram.mathematica.package","friendlyType":"Wolfram Mathematica Code","filesize":25836,"description":"Script to analyse the speed of individual flies exposed to a ShiftingComfotableTile protocol. The script permits specifying which tile was comfortable on each iteration. Results are produced in cm/s. This script also allows correcting for errors in perspective of a rectangular area due to the camera used for recording","storageIdentifier":"surf://store:16421d64e2a-d1ccbe205aea","rootDataFileId":-1,"checksum":{"type":"SHA-1","value":"09e72df503118a0b71b3f96913abfe2afce166b5"},"tabularData":false,"creationDate":"2018-06-21","publicationDate":"2018-11-21","lastUpdateTime":"2019-06-06T15:49:03Z","fileAccessRequest":false}},{"description":"Folder containing the Python-based code of the FlySteps tracker. The user must open configration_file.ini to set up the location of the videos to the tracked, the dimensions and shape of the area to be tracked, the number of subjects, the background contrast, and the location and intensity of the indicative red LEDs. \r\n\r\nWe ran this tracker on an Ubuntu 14.04 Linux machine.","label":"Fly_Tracker.zip","restricted":false,"version":1,"datasetVersionId":1628,"dataFile":{"id":10897,"persistentId":"","filename":"Fly_Tracker.zip","contentType":"application/zip","friendlyType":"ZIP Archive","filesize":40027,"description":"Folder containing the Python-based code of the FlySteps tracker. 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It allows specifying when temperature changes occur and of which magnitude each change should be. It also allows determining when and for how long each of the indicative red LEDs should be on. It is directly related to the LoB.m script, which contains the temperature controlling functions and to the ArduinoControl.ino which contains the main code for the programmable circuit inside the temperature-controlled arena. \r\n\r\nThe current set up of the script produces a temperature curve between 16°C and 46°C in which temperature changes 2°C every 60 seconds. All tiles are heated up at the same time. ","label":"TemperaturePhases.m","restricted":false,"version":1,"datasetVersionId":1628,"dataFile":{"id":11516,"persistentId":"","filename":"TemperaturePhases.m","contentType":"application/vnd.wolfram.mathematica.package","friendlyType":"Wolfram Mathematica Code","filesize":969,"description":"This script allows the user to determine the temperature in each of the three copper tiles. It allows specifying when temperature changes occur and of which magnitude each change should be. It also allows determining when and for how long each of the indicative red LEDs should be on. It is directly related to the LoB.m script, which contains the temperature controlling functions and to the ArduinoControl.ino which contains the main code for the programmable circuit inside the temperature-controlled arena. \r\n\r\nThe current set up of the script produces a temperature curve between 16°C and 46°C in which temperature changes 2°C every 60 seconds. All tiles are heated up at the same time. ","storageIdentifier":"surf://store:16421d1ca20-cefc56c9e40e","rootDataFileId":-1,"checksum":{"type":"SHA-1","value":"61ab4facf8490f257a0d2e73956f92b1ec706b97"},"tabularData":false,"creationDate":"2018-06-21","publicationDate":"2018-11-21","lastUpdateTime":"2019-06-06T15:49:03Z","fileAccessRequest":false}},{"description":"This script allows the user to produce a temperature curve between 16°C and 46°C in which temperature changes 2°C every 60 seconds and in which one tile is warm up to only 22°C to provide a comfortable location for the flies to walk on. The comfortable tile changes location on every iteration. It is directly related to the LoB.m script, which contains the temperature controlling functions and to the ArduinoControl.ino which contains the main code for the programmable circuit inside the temperature-controlled arena.","label":"TemperaturePhases_ShiftingComfortableTile.m","restricted":false,"version":1,"datasetVersionId":1628,"dataFile":{"id":10900,"persistentId":"","filename":"TemperaturePhases_ShiftingComfortableTile.m","contentType":"application/octet-stream","friendlyType":"Unknown","filesize":1463,"description":"This script allows the user to produce a temperature curve between 16°C and 46°C in which temperature changes 2°C every 60 seconds and in which one tile is warm up to only 22°C to provide a comfortable location for the flies to walk on. The comfortable tile changes location on every iteration. It is directly related to the LoB.m script, which contains the temperature controlling functions and to the ArduinoControl.ino which contains the main code for the programmable circuit inside the temperature-controlled arena.","storageIdentifier":"surf://store:162d44254cf-32aa62b7872b","rootDataFileId":-1,"checksum":{"type":"SHA-1","value":"bb48dfc9726ac38b7e2d3fc3011311c7062aceb4"},"tabularData":false,"creationDate":"2018-04-17","publicationDate":"2018-11-21","lastUpdateTime":"2019-06-06T15:49:03Z","fileAccessRequest":false}}]}}}